Taxonomic group: bacteria / Firmicutes
(Phylum: Firmicutes)
Associated disease: infection due to Bacillus [ICD11:
XN9ZE 
]
The structure was elucidated in this paperNCBI PubMed ID: 35287863Publication DOI: 10.1016/j.carbpol.2022.119241Journal NLM ID: 8307156Publisher: Elsevier
Correspondence: S.G. Dastager <sg.dastager

ncl.res.in>
Institutions: Academy of Scientific and Innovative Research (AcSIR), New Delhi, India, NCIM Resource Center, CSIR-National Chemical Laboratory, Pune 411008, India, Division of Organic Chemistry, CSIR-National Chemical Laboratory, Pune 411008, India, Beckman Coulter Life Sciences, Mumbai, India
In the present study, a cost-effective, robust Microbioreactor based production optimization of levan like exopolysaccharide from marine Bacillus sp. SGD-03 was analysed. FE-SEM analysis has showed the significant fibrillar structure of EPS. Size exclusion chromatography and other analytical data revealed that, produced EPS has a molecular weight of 1.0 × 104 Da and is composed of fructose monosaccharide with hydroxyl, carbonyl, and ether groups. The backbone structure of EPS has a branching pattern of β-(2,6) linkages which confirms the similarity with available levan like polymers. The cost-effective media composition for levan production was demonstrated. The maximum yield of crude levan obtained was 123.9 g/L by response surface methodology using robust BioLector Pro Microbioreactor, and same has been validated with shake flask, 1 L and 10 L pilot-scale fermentation.
structure, EPS, marine, optimization, microbioreactor
Structure type: fragment of a bigger structure ; 10000
Location inside paper: p. 119241-9, Fig. 8A, Fig. 8B
Trivial name: a levan type
Compound class: EPS
Contained glycoepitopes: IEDB_923066
Methods: 13C NMR, 1H NMR, NMR-2D, PCR, sugar analysis, TLC, FTIR, SEC-HPLC, SEM, DEPT, genome sequencing, UHPLC, FE-SEM, EPS production, data analysis, screening of EPS producing strain, LC-HRMS
Comments, role: NMR temperature was not specified
NCBI Taxonomy refs (TaxIDs): 1402856
Show glycosyltransferases
NMR conditions: in D2O
[as TSV]
13C NMR data:
Linkage Residue C1 C2 C3 C4 C5 C6
bDFruf 59.9 104.2 76.3 75.2 80.3 63.4
1H NMR data:
Linkage Residue H1 H2 H3 H4 H5 H6
bDFruf 3.60-3.71 - 4.12 4.03 3.89 3.48-3.83
1H/13C HSQC data:
Linkage Residue C1/H1 C2/H2 C3/H3 C4/H4 C5/H5 C6/H6
bDFruf 59.9/3.60-3.71 76.3/4.12 75.2/4.03 80.3/3.89 63.4/3.48-3.83
1H NMR data:
| Linkage | Residue | H1 | H2 | H3 | H4 | H5 | H6 |
| | bDFruf | 3.60 3.71 |
| 4.12 | 4.03 | 3.89 | 3.48 3.83 |
|
13C NMR data:
| Linkage | Residue | C1 | C2 | C3 | C4 | C5 | C6 |
| | bDFruf | 59.9 | 104.2 | 76.3 | 75.2 | 80.3 | 63.4 |
|
There is only one chemically distinct structure:
Taxonomic group: bacteria / Proteobacteria
(Phylum: Proteobacteria)
The structure was elucidated in this paperNCBI PubMed ID: 32932700Publication DOI: 10.3390/polym12092073Journal NLM ID: 101545357Publisher: Basel: MDPI
Correspondence: shjung

konkuk.ac.kr
Institutions: Department of Bioscience and Biotechnology, Microbial Carbohydrate Resource Bank (MCRB), Center for Biotechnology Research in UBITA (CBRU), Konkuk University, Seoul 05029, Korea, Department of Systems Biotechnology & Institute for Ubiquitous Information Technology and Applications (UBITA), Center for Biotechnology Research in UBITA (CBRU), Konkuk University, Seoul 05029, Korea
Rhizobia produces different types of surface polysaccharides. Among them, cyclic β-(1→2)-D-glucan is located in the periplasmic space of rhizobia and plays an important role in the adaptation of bacteria to osmotic adaptation. Cyclic β-(1→2)-D-glucan (CG), synthesized from Sinorhiozbium meliloti 1021, has a neutral and anionic form. In the present study, we characterized the exact chemical structures of anionic CG after purification using size exclusion s (Bio-Gel P-6 and P-2) chromatography, and DEAE-Sephadex anion exchange chromatography. The exact structure of each isolated anionic CG was characterized using various analytical methods such as nuclear magnetic resonance (NMR), attenuated total reflection Fourier transform infrared (ATR-FTIR) spectroscopy and matrix associated laser desorption ionization-time of Flight (MALDI-TOF) mass spectrometry. The precise chemical structures of novel anionic CG molecules were elucidated by various NMR spectroscopic analyses, including 1H, 13C, 31P, and 2D HSQC NMR spectroscopy. As a result, we discovered that anionic CG molecules have either glycerophosphoryl or succinyl residues at C6 positions of a neutral CG. In addition, the results of MALDI-TOF mass spectrometric analysis confirmed that there are two types of patterns for anionic CG peaks, where one type of peak was the succinylated CG (SCG) and the other was glycerophospholated CG (GCG). In addition, it was revealed that each anionic CG has one to four substituents of the succinyl group of SCG and glycerophosphoryl group of GCG, respectively. Anionic CG could have potential as a cyclic polysaccharide for drug delivery systems and a chiral separator based on the complexation with basic target molecules.
NMR, characterization, MALDI-TOF, Sinorhizobium meliloti 1021, anionic cyclic beta-(1>2)-D-glucan, cyclic polysaccharide, phosphglycerol substituents
Structure type: cyclic polymer repeating unit ; n=19-25
Location inside paper: Fig.2, Fig.3
Trivial name: cyclic β-(1→2)-D-glucan (anionic CG)
Compound class: surface polysaccharide
Contained glycoepitopes: IEDB_130695,IEDB_140628,IEDB_142488,IEDB_146664,IEDB_241118,IEDB_983931,SB_192
Methods: 13C NMR, 1H NMR, NMR-2D, 31P NMR, anion-exchange chromatography, MALDI-TOF MS, SEC, FE-SEM, ATR-FTIR
Comments, role: Anionic glucans contains 1-4 succinyl and phosphoglycerol residues per molecule. The two substituents were not present in one molecule at the same time, but existed separately in each molecule.
NCBI Taxonomy refs (TaxIDs): 266834
Show glycosyltransferases
1H NMR data: present in publication
|
13C NMR data: present in publication
|
There is only one chemically distinct structure: