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1.
(
Organism ID:
86)
Bordetella
hinzii
(
NCBI TaxID 103855
,
species name lookup
)
Taxonomic group:
bacteria
Phylum:
Proteobacteria
The following compound(s) are assigned to this organism:
Compound ID:
166
3HOMyr-(1-3)-+ 3HOMyr-(1-2)-+ | | 2HOMyr-(1-3)-3HOMyr-(1-2)-b-D-GlcpN-(1-6)-a-D-GlcpN-(1-P | | P-4)-+ 3HOLau-(1-3)-+
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Structure type:
oligomer
Compound class:
lipid A
Carbohydrate Research
2003, "Structure of bacterial lipopolysaccharides"
CSDB ID 31473
(all data & tools)
Compound ID:
7349
a-D-GlcpN-(1-7)-+ | a-D-GlcpA-(1-2)-L-gro-a-D-manHepp-(1-3)-+ | | P-4)-+ | | a-D-GalpNA-(1-6)-+ | | | b-D-Sugp2Ac3Ac6NH2-(1-4)-b-D-GlcpNAc3NAcA6NH2-(1-4)-a-D-GalpNAc-(1-4)-b-D-ManpNAc3NAcA-(1-3)-b-D-FucpNAc4N-(1-6)-a-D-GlcpN-(1-4)-b-D-Glcp-(1-4)-L-gro-a-D-manHepp-(1-5)-Kdo Sug = 2,3-diamino-2,3,4-trideoxy-hex-4-enuronopyranose = SMILES N{3}[C@H]1C=C({6}C(O)=O)O{1}[C@@H](O){2}[C@H]1N
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Structure type:
oligomer
Compound class:
core oligosaccharide
Reference(s) to other database(s):
GlycomeDB:
35231
Carbohydrate Research
2007, "The structure of the core-O-chain linkage region of the lipopolysaccharide from Bordetella hinzii"
CSDB ID 21700
(all data & tools)
Compound ID:
7350
a-D-GlcpN-(1-7)-+ | a-D-GlcpA-(1-2)-L-gro-a-D-manHepp-(1-3)-+ | | P-4)-+ | | a-D-GalpNA-(1-6)-+ | | | b-D-Sug2Ac3Ac6NH2-(1-4)-b-D-ManpNAc3NAcA6NH2-(1-4)-b-D-GlcpNAc3NAcA6NH2-(1-4)-a-D-GalpNAc-(1-4)-b-D-ManpNAc3NAcA-(1-3)-b-D-FucpNAc4N-(1-6)-a-D-GlcpN-(1-4)-b-D-Glcp-(1-4)-L-gro-a-D-manHepp-(1-5)-Kdo Sug = 2,3-diamino-2,3,4-trideoxy-hex-4-enuronopyranose = SMILES N{3}[C@H]1C=C({6}C(O)=O)O{1}[C@H](O){2}[C@@H]1N
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Structure type:
oligomer
Compound class:
core oligosaccharide
Reference(s) to other database(s):
GlycomeDB:
35232
Carbohydrate Research
2007, "The structure of the core-O-chain linkage region of the lipopolysaccharide from Bordetella hinzii"
CSDB ID 21701
(all data & tools)
Compound ID:
8827
-4)-b-D-GlcpNAc3NAcA6NH2-(1-4)-b-D-GlcpNAc3NAcA6NH2-(1-4)-a-D-GalpNAc3NAcA6NH2-(1-
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Structure type:
polymer chemical repeating unit
Compound class:
O-polysaccharide
Reference(s) to other database(s):
GTC:G11092DJ, GlycomeDB:
26669
Mass Spectrometry Reviews
2010, "Structural investigation of bacterial lipopolysaccharides by mass spectrometry and tandem mass spectrometry"
CSDB ID 25514
(all data & tools)
Compound ID:
8828
a-D-GalpNAc3NAcA4Me6NH2-(1--/(1->4) O-antigen (ID 25514)/
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Structure type:
fragment of a bigger structure
Aglycon:
(1->4) O-antigen (ID 25514)
Compound class:
O-polysaccharide
Reference(s) to other database(s):
GTC:G01424TS
Mass Spectrometry Reviews
2010, "Structural investigation of bacterial lipopolysaccharides by mass spectrometry and tandem mass spectrometry"
CSDB ID 25515
(all data & tools)
Compound ID:
10594
-4)-b-D-GlcpNAc3NAcA6NH2-(1-4)-b-D-GlcpNAc3NAcA6NH2-(1-4)-a-L-GalpNAc3NAcA6NH2-(1-
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Structure type:
polymer chemical repeating unit
Compound class:
O-polysaccharide
Reference(s) to other database(s):
GTC:G91106FJ
BOOK: Bacterial lipopolysaccharides: Structure, chemical synthesis, biogenesis and interaction with host cells; Eds.: Knirel YA, Valvano MA; Springer
2011, "Structure of O-antigens"
CSDB ID 27897
(all data & tools)
Compound ID:
16261
b-D-ManpNAc3NAcA6NH2-(1-4)-b-D-GlcpNAc3NAcA6NH2-(1-4)-a-D-GalpNAc-(1-4)-b-D-ManpNAc3NAcA-(1-3)-b-D-FucpNAc4N-(1-6)-a-D-GlcpN
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Structure type:
oligomer
Trivial name:
O-chain-core
Compound class:
core oligosaccharide
Chinese Journal of Natural Medicines = Zhongguo Tianran Yaowu
2022, "Chemical approaches towards installation of rare functional groups in bacterial surface glycans"
CSDB ID 9124
(all data & tools)
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