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1. (Article ID: 8801)
Pachl P, Škerlová J, Šimčíková D, Kotik M, Křenková A, Mader P, Brynda J, Kapešová J, Křen V, Otwinowski Z, Řezáčová P
Crystal structure of native α-L-rhamnosidase from Aspergillus terreus
Acta Crystallographica. Section D, Biological Crystallography 74(11) (2018)
1078-1084
α-L-Rhamnosidases cleave terminal nonreducing α-L-rhamnosyl residues from many natural rhamnoglycosides. This makes them catalysts of interest for various biotechnological applications. The X-ray structure of the GH78 family α-L-rhamnosidase from Aspergillus terreus has been determined at 1.38 Å resolution using the sulfur single-wavelength anomalous dispersion phasing method. The protein was isolated from its natural source in the native glycosylated form, and the active site contained a glucose molecule, probably from the growth medium. In addition to its catalytic domain, the α-L-rhamnosidase from A. terreus contains four accessory domains of unknown function. The structural data suggest that two of these accessory domains, E and F, might play a role in stabilizing the aglycon portion of the bound substrate.
Colon cancer, prebiotic, Anticancer, anti-inflammatory, Edible mushroom, chemoprevention
NCBI PubMed ID: 30387766Publication DOI: 10.1107/s2059798318013049Journal NLM ID: 9305878Publisher: Malden, MA: Wiley-Blackwell
Correspondence: Řezáčová P
uochb.cas.cz>
Institutions: Institute of Molecular Genetics, The Czech Academy of Sciences, Prague, Czech Republic, Institute of Microbiology, The Czech Academy of Sciences, Prague, Czech Republic, UT Southwestern Medical Center, Dallas, USA, Structural Biology, Institute of Organic Chemistry and Biochemistry, The Czech Academy of Sciences, Prague, Czech Republic
Methods: x-ray
The publication contains the following compound(s):
- Compound ID: 21814
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a-D-Manp-(1-3)-b-D-Manp-(1-4)-b-D-GlcpNAc-(1-4)-b-D-GlcpNAc-(1--/(->4) Asn-X-Ser/Thr (AtRha)/ |
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Structure type: structural motif or average structure
Aglycon: (->4) Asn-X-Ser/Thr (AtRha)
Reference(s) to other database(s): GTC:G81315DD
- Compound ID: 21815
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a-D-Manp-(1-3)-+
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a-D-Manp-(1-3)-a-D-Manp-(1-6)-b-D-Manp-(1-4)-b-D-GlcpNAc-(1-4)-b-D-GlcpNAc-(1--/(->4) Asn-X-Ser/Thr (AtRha)/ |
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Structure type: structural motif or average structure
Aglycon: (->4) Asn-X-Ser/Thr (AtRha)
Reference(s) to other database(s): GTC:G09724ZC
- Compound ID: 21816
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a-D-Manp-(1-6)-+
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a-D-Manp-(1-3)-b-D-Manp-(1-4)-b-D-GlcpNAc-(1-4)-b-D-GlcpNAc-(1--/(->4) Asn-X-Ser/Thr (AtRha)/ |
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Structure type: structural motif or average structure
Aglycon: (->4) Asn-X-Ser/Thr (AtRha)
Reference(s) to other database(s): GTC:G22768VO
- Compound ID: 21817
Structure type: monomer
Aglycon: (->4) Asn-X-Ser/Thr (AtRha)
Reference(s) to other database(s): GTC:G49108TO
- Compound ID: 21818
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b-D-GlcpNAc-(1-4)-b-D-GlcpNAc-(1--/(->4) Asn-X-Ser/Thr (AtRha)/ |
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Structure type: structural motif or average structure
Aglycon: (->4) Asn-X-Ser/Thr (AtRha)
Reference(s) to other database(s): GTC:G42666HT
- Compound ID: 21819
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a-D-Manp-(1-6)-+
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a-D-Manp-(1-3)-a-D-Manp-(1-6)-b-D-Manp-(1-4)-b-D-GlcpNAc-(1-4)-b-D-GlcpNAc-(1--/(->4) Asn-X-Ser/Thr (AtRha)/ |
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Structure type: structural motif or average structure
Aglycon: (->4) Asn-X-Ser/Thr (AtRha)
Reference(s) to other database(s): GTC:G94106MV
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2. (Article ID: 9109)
Araújo D, Ferreira IC, Torres CAV, Neves L, Freitas F
Chitinous polymers: extraction from fungal sources, characterization and processing towards value-added applications
Journal of Chemical Technology and Biotechnology 95(5) (2020)
1277-1289
Chitin, chitosan and their complexes with β-glucan (chitin–glucan complex, CGC, and chitosan–glucan complex, ChGC) are value-added polysaccharides extracted from the cell-walls of many fungi. Commercial chitin and its deacetylated form, chitosan, are currently obtained from marine waste material, mostly animal sources (crustaceans and marine invertebrates), through harsh chemical procedures that have low reproducibility due to the variability of the composition of the sources and their seasonal character. These disadvantages are overcome by using fungi as sources of chitinous polymers. The extraction of chitin/chitosan from fungi cell-walls has the great advantage of yielding products with stable composition and properties, using simpler procedures, with the added benefit of also generating CGC and ChGC, two copolymers that combine the proven properties of chitin/chitosan with those of β-glucans. Over the last decades, fungal chitinous polymers have been the focus of extensive research that included optimization of the cultivation conditions of a wide range of species and the development of optimized extraction, purification and characterization techniques, as well as the demonstration of the biopolymers' biological properties, which include immunomodulatory, anticancer, antioxidant and antimicrobial activity. Given these properties, several attempts were made to develop applications for them in areas ranging from biomedicine and pharmaceuticals to food and agriculture. Despite their wide range of proven functional properties that include the ability to form different polymeric structures, as well as biological activity, fungal chitinous biopolymers are still underexplored. Nevertheless, these biopolymers hold great potential for development into valuable products or applications that are surely worth further investigation.
fungi, chitosan, chitin, cell-wall polysaccharides, chitin–glucan complex (CGC), chitosan–glucan complex (ChGC)
Publication DOI: 10.1002/jctb.6325Journal NLM ID: 8711102Publisher: Chichester Sussex: Published For The Society Of Chemical Industry By Wiley And Sons Ltd
Correspondence: Freitas F
fct.unl.pt>
Institutions: UCIBIO-REQUIMTE, Chemistry Department, Faculty of Sciences and Technology, NOVA University of Lisbon, Lisbon, Portugal, LAQV-REQUIMTE, Chemistry Department, Faculty of Sciences and Technology, NOVA University of Lisbon, Lisbon, Portugal
The publication contains the following compound(s):
- Compound ID: 15325
Structure type: homopolymer
Trivial name: chitin
Compound class: O-polysaccharide, cell wall polysaccharide, glucan, polysaccharide, chitin
Reference(s) to other database(s): GTC:G97099AY, CCSD:
46067, CBank-STR:5851, GenDB:KF905651
- Compound ID: 20230
Structure type: structural motif or average structure
Trivial name: chitosan
Compound class: O-polysaccharide, cell wall polysaccharide, glucan, polysaccharide
Reference(s) to other database(s): GTC:G97099AY
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