CSDB: Search results

Found 1 organism. Displayed organism 1
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1. (Organism ID: 94)

Yersinia pestis

on a lifemap

(NCBI TaxID 632, species name lookup)

Taxonomic group: bacteria
Phylum: Proteobacteria

The following compound(s) are assigned to this organism:

Compound ID: 176

Compound 176

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Compound ID: 349

Compound 349

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Compound ID: 777

Compound 777

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Compound ID: 778

Compound 778

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Compound ID: 779

Compound 779

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Compound ID: 780

Compound 780

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Compound ID: 3775

Compound 3775

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Compound ID: 1030

-6)-b-D-GlcpNAc-(1- Show graphically

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Structure type: homopolymer
Trivial name: poly-β-1,6-GlcNAc (PGA), biofilm, poly-b-(1-6)-N-acetyl-D-glucosamine (PNAG), poly-β-N-acetyl-glucosamine (PNAG), PNAG, poly-N-acetylglucosamine, PNAG
Compound class: CPS, EPS, O-polysaccharide, glucan, polysaccharide
Reference(s) to other database(s): GTC:G36952FI, GlycomeDB:11210

Journal of Bacteriology 2005, "Depolymerization of b-1,6-N-acetyl-D-glucosamine disrupts the integrity of diverse bacterial biofilms"
CSDB ID 10059 (all data & tools)

Engineering (Beijing) 2024, "Antibodies targeting a conserved surface polysaccharide are protective against a wide range of microbial pathogens producing β-1–6-linked poly-N-acetylglucosamine (PNAG)"
CSDB ID 15645 (all data & tools)
Compound ID: 6540

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Structure type: cyclic polymer repeating unit ; n=3-5
Compound class: enterobacterial common antigen
Reference(s) to other database(s): GTC:G85099CB, GlycomeDB:8670

Carbohydrate Research 1994, "The structure of the cyclic enterobacterial common antigen (ECA) from Yersinia pestis"
CSDB ID 117946 (all data & tools)
Compound ID: 6541

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Structure type: polymer chemical repeating unit ; n=3-4
Compound class: enterobacterial common antigen
Reference(s) to other database(s): GTC:G85099CB, GlycomeDB:8670

Carbohydrate Research 1994, "The structure of the cyclic enterobacterial common antigen (ECA) from Yersinia pestis"
CSDB ID 117947 (all data & tools)
Compound ID: 6542

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Structure type: oligomer
Compound class: enterobacterial common antigen
Reference(s) to other database(s): GTC:G34733JU, GlycomeDB:8670

Carbohydrate Research 1994, "The structure of the cyclic enterobacterial common antigen (ECA) from Yersinia pestis"
CSDB ID 332 (all data & tools)
Compound ID: 6543

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Structure type: oligomer
Compound class: enterobacterial common antigen
Reference(s) to other database(s): GTC:G07245SB, GlycomeDB:8670

Carbohydrate Research 1994, "The structure of the cyclic enterobacterial common antigen (ECA) from Yersinia pestis"
CSDB ID 333 (all data & tools)

Compound ID: 105

Compound 105

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Compound ID: 7558

Compound 7558

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Compound ID: 7559

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Structure type: fragment of a bigger structure
Compound class: lipid A

Advances in Experimental Medicine and Biology 2007, "Relationship of the lipopolysaccharide structure of Yersinia pestis to resistance to antimicrobial factors"
CSDB ID 21916 (all data & tools)

Compound ID: 4346

Compound 4346

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Compound ID: 7641

Compound 7641

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Compound ID: 7022

Compound 7022

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Compound ID: 7560

Compound 7560

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Compound ID: 7024

Compound 7024

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Compound ID: 7761

Compound 7761

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Compound ID: 7762

Compound 7762

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Compound ID: 7763

Compound 7763

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Compound ID: 8551

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Structure type: homopolymer
Trivial name: PNAG, polysaccharide intercellular adhesin (PIA)
Compound class: EPS
Reference(s) to other database(s): GTC:G11006VI

Carbohydrate Research 2009, "Efficient synthesis and protein conjugation of β-(1→6)-d-N-acetylglucosamine oligosaccharides from the polysaccharide intercellular adhesin"
CSDB ID 24080 (all data & tools)
Compound ID: 8934

-6)-b-D-GlcpNAc-(1- Show graphically

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Structure type: homopolymer ; n=5,9
Aglycon: spacer
Trivial name: PNAG
Compound class: EPS
Reference(s) to other database(s): GTC:G11006VI, GlycomeDB:11210

Infection and Immunity 2010, "Synthetic b-(1->6)-linked N-acetylated and non-acetylated oligoglucosamines to produce conjugate vaccines for bacterial pathogens"
CSDB ID 25253 (all data & tools)
Compound ID: 8935

-6)-b-D-GlcpN-(1- Show graphically

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Structure type: homopolymer ; n=5,9
Aglycon: spacer
Trivial name: PNAG
Compound class: EPS
Reference(s) to other database(s): GTC:G30568EB, GlycomeDB:27802

Infection and Immunity 2010, "Synthetic b-(1->6)-linked N-acetylated and non-acetylated oligoglucosamines to produce conjugate vaccines for bacterial pathogens"
CSDB ID 25650 (all data & tools)

Compound ID: 9218

Compound 9218

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Compound ID: 9325

Compound 9325

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Compound ID: 3931

Compound 3931

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Compound ID: 942

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Structure type: oligomer
Aglycon: lipid A
Trivial name: outer core region
Compound class: core oligosaccharide, LOS, LPS
Reference(s) to other database(s): GTC:G36348JQ, GlycomeDB:5576

Proceedings of the National Academy of Sciences of the USA 2011, "Dioxygenases in Burkholderia ambifaria and Yersinia pestis that hydroxylate the outer Kdo unit of lipopolysaccharide"
CSDB ID 26165 (all data & tools)
Compound ID: 7566

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Structure type: oligomer
Aglycon: lipid A
Trivial name: core glycoform
Compound class: core oligosaccharide
Reference(s) to other database(s): GTC:G95969AX, GlycomeDB:25717

Proceedings of the National Academy of Sciences of the USA 2011, "Dioxygenases in Burkholderia ambifaria and Yersinia pestis that hydroxylate the outer Kdo unit of lipopolysaccharide"
CSDB ID 26585 (all data & tools)
Compound ID: 9679

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Structure type: fragment of a bigger structure
Aglycon: lipid A
Compound class: core oligosaccharide
Reference(s) to other database(s): GTC:G35106WM

Mendeleev Communications 2011, "Higher aldulosonic acids: components of bacterial glycans"
CSDB ID 31090 (all data & tools)
Compound ID: 10278

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Structure type: cyclic polymer repeating unit ; n=4
Trivial name: ECA(CYC)
Compound class: glycolipid
Reference(s) to other database(s): GTC:G53739AR

Journal of Bacteriology 2003, "Identification and biosynthesis of cyclic enterobacterial common antigen in Escherichia coli"
CSDB ID 11472 (all data & tools)

Compound ID: 10607

Compound 10607

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Compound ID: 10608

Compound 10608

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Compound ID: 10609

Compound 10609

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Compound ID: 10610

Compound 10610

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Compound ID: 10611

Compound 10611

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Compound ID: 10612

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Structure type: cyclic polymer repeating unit ; n=3-5
Compound class: enterobacterial common antigen
Reference(s) to other database(s): GTC:G21261CH

Acta Naturae 2012, "Lipopolysaccharide of Yersinia pestis, the cause of plague: structure, genetics, biological properties"
CSDB ID 28425 (all data & tools)
Compound ID: 11089

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Structure type: oligomer
Aglycon: 5-aminopentyl, diphtheria toxoid CRMM 197
Compound class: core oligosaccharide
Reference(s) to other database(s): GTC:G63698SU

Angewandte Chemie, International Edition 2013, "Plague detection by anti-carbohydrate antibodies"
CSDB ID 29905 (all data & tools)

Compound ID: 11341

Compound 11341

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Compound ID: 11342

Compound 11342

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Compound ID: 11454

Compound 11454

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Compound ID: 11455

Compound 11455

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Compound ID: 11505

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Structure type: oligomer
Aglycon: 5-aminopentyl
Compound class: core oligosaccharide
Reference(s) to other database(s): GTC:G86764JR

Journal of the American Chemical Society 2013, "Diversity-oriented Synthesis of Inner Core Oligosaccharides of the Lipopolysaccharide of Pathogenic Gram-negative Bacteria"
CSDB ID 29838 (all data & tools)

Chemistry and Biology 2015, "Antigenic Potential of a Highly Conserved Neisseria meningitidis Lipopolysaccharide Inner Core Structure Defined by Chemical Synthesis"
CSDB ID 30851 (all data & tools)

Compound ID: 11643

Compound 11643

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Compound ID: 11644

Compound 11644

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Compound ID: 12008

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Structure type: oligomer
Aglycon: 5-aminopentyl
Compound class: core oligosaccharide
Reference(s) to other database(s): GTC:G63698SU

Chemistry and Biology 2015, "Antigenic Potential of a Highly Conserved Neisseria meningitidis Lipopolysaccharide Inner Core Structure Defined by Chemical Synthesis"
CSDB ID 30854 (all data & tools)
Compound ID: 12079

-6)-b-D-GlcpNAc-(1- Show graphically

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Structure type: homopolymer ; n=9
Aglycon: 3-(4-(acetylthio)butyrylamino)propyl or spacer + carrier protein (Tetanus Toxoid)
Trivial name: PNAG
Reference(s) to other database(s): GTC:G11006VI

Carbohydrate Research 2015, "Surface polysaccharides from Acinetobacter baumannii: Structures and syntheses"
CSDB ID 30956 (all data & tools)
Compound ID: 13297

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Structure type: polymer chemical repeating unit
Compound class: EPS, glucan
Reference(s) to other database(s): GTC:G06401NN

Current Medicinal Chemistry 2013, "An overview on natural polysaccharides with antioxidant properties"
CSDB ID 47195 (all data & tools)

Compound ID: 14458

Compound 14458

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Compound ID: 14461

Compound 14461

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Compound ID: 379

Compound 379

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Compound ID: 15050

Compound 15050

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Compound ID: 15743

Compound 15743

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Compound ID: 15771

Compound 15771

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Compound ID: 15772

Compound 15772

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Compound ID: 15773

Compound 15773

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Compound ID: 15774

Compound 15774

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Compound ID: 3774

Compound 3774

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Compound ID: 1598

Compound 1598

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Compound ID: 16106

Compound 16106

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Compound ID: 15709

Compound 15709

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