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Dinadayala P, Lemassu A, Granovski P, Cérantola S, Winter N, Daffé M
Revisiting the structure of the anti-neoplastic glucans of Mycobacterium bovis Bacille Calmette-Guérin. Structural analysis of the extracellular and boiling water extract-derived glucans of the vaccine substrains
Journal of Biological Chemistry 279(13) (2004)
12369-78
Mycobacterium bovis BCG
(NCBI TaxID 33892,
species name lookup)
Taxonomic group: bacteria / Actinobacteria
(Phylum: Actinobacteria)
Associated disease: infection due to Mycobacterium bovis [ICD11:
XN8AB 
]
The structure was elucidated in this paperNCBI PubMed ID: 14715664Publication DOI: 10.1074/jbc.M308908200Journal NLM ID: 2985121RPublisher: Baltimore, MD: American Society for Biochemistry and Molecular Biology
Correspondence: mamadou.daffe

ipbs.fr
Institutions: Departement Mecanismes Moleculaires des Infections Mycobacteriennes, Institut de Pharmacologie et Biologie Structurale, UMR 5089 du CNRS et de l'Universite Paul Sabatier, 205 route de Narbonne, 31077 Toulouse cedex 04, France
The attenuated strain of Mycobacterium bovis, Bacille Calmette-Guérin (BCG), used worldwide to prevent tuberculosis and leprosy is also clinically used as an immunotherapeutic agent against superficial bladder cancer. An anti-tumor polysaccharide has been isolated from the boiling-water extract of the Tice substrain of BCG and tentatively characterized as consisting primarily of repeating units of 6-linked-glucosyl residues. M. tuberculosis and other mycobacterial species produce a glycogen-like α-glucan, composed of repeating units of 4-linked-glucosyl residues substituted at some positions 6 by short oligoglucosyl units, that also exhibits an anti-tumor activity. Therefore, the impression prevails that mycobacteria synthesize different types of anti-neoplastic glucans or, alternatively, the BCG substrains are singular in producing a unique type of glucan that may confer to them their immunotherapeutic property. The present study addresses this question through the comparative analysis of α-glucans purified from the extracellular materials and boiling-water extracts of three vaccine substrains. The polysaccharides were purified and their structural features were established by mono-and two-dimensional NMR spectroscopy and matrix-assisted laser desorption/ionization time-of-flight mass spectrometry of the enzymatic and chemical degradation products of the purified compounds. The glucans isolated by the two methods from the three substrains of BCG were shown to exhibit identical structural features shared with the glycogen-like α-glucan of M. tuberculosis and other mycobacteria. Incidentally, we observed an occasional release of dextrans from Sephadex columns that may explain the reported occurrence of 6-substituted-α-glucans in mycobacteria.
structure, NMR spectroscopy, Mycobacterium, vaccine, glucan, tuberculosis
Structure type: polymer chemical repeating unit
Location inside paper: Fig. 1
Trivial name: glucan
Contained glycoepitopes: IEDB_140629,IEDB_142488,IEDB_144998,IEDB_146664,IEDB_158538,IEDB_983931,SB_192
Methods: 13C NMR, 1H NMR, NMR-2D, GC-MS, sugar analysis, GC, RT-PCR, aminopyrene trisulfonic acid derivatization
Biological activity: anti-neoplastic activity
Biosynthesis and genetic data: genetic data
Comments, role: the glucan purified from the boiling water extract of the Tice strain of M. bovis BCG, number of -6)aDGlcp(1- is unknown
Related record ID(s): 9627, 9628
NCBI Taxonomy refs (TaxIDs): 33892Reference(s) to other database(s): GTC:G05311OZ, GlycomeDB:
27578
Show glycosyltransferases
NMR conditions: in D2O
[as TSV]
13C NMR data:
Linkage Residue C1 C2 C3 C4 C5 C6
6 aDGlcp 99.8 73.5 75.5 71.8 72.3 67.9
4 aDGlcp 100.1 72.0 73.4 70.0 ? 61.3
aDGlcp 98.5 ? ? ? ? ?
1H NMR data:
Linkage Residue H1 H2 H3 H4 H5 H6
6 aDGlcp 5.05 3.65 3.80 3.57 3.98 3.85-4.04
4 aDGlcp 5.38 3.62 3.72 3.44 3.73 3.80-3.90
aDGlcp 4.99 3.64 4.03 3.66 3.88 ?
1H/13C HSQC data:
Linkage Residue C1/H1 C2/H2 C3/H3 C4/H4 C5/H5 C6/H6
6 aDGlcp 99.8/5.05 73.5/3.65 75.5/3.80 71.8/3.57 72.3/3.98 67.9/3.85-4.04
4 aDGlcp 100.1/5.38 72.0/3.62 73.4/3.72 70.0/3.44 ?/3.73 61.3/3.80-3.90
aDGlcp 98.5/4.99 ?/3.64 ?/4.03 ?/3.66 ?/3.88 ?/?
1H NMR data:
Linkage | Residue | H1 | H2 | H3 | H4 | H5 | H6 |
6 | aDGlcp | 5.05 | 3.65 | 3.80 | 3.57 | 3.98 | 3.85 4.04 |
4 | aDGlcp | 5.38 | 3.62 | 3.72 | 3.44 | 3.73 | 3.80 3.90 |
| aDGlcp | 4.99 | 3.64 | 4.03 | 3.66 | 3.88 | ? |
|
13C NMR data:
Linkage | Residue | C1 | C2 | C3 | C4 | C5 | C6 |
6 | aDGlcp | 99.8 | 73.5 | 75.5 | 71.8 | 72.3 | 67.9 |
4 | aDGlcp | 100.1 | 72.0 | 73.4 | 70.0 | ? | 61.3 |
| aDGlcp | 98.5 | ? | ? | ? | ? | ? |
|
 The spectrum also has 6 signals at unknown positions (not plotted). |
There is only one chemically distinct structure:
Expand this record
Collapse this record
Dinadayala P, Lemassu A, Granovski P, Cérantola S, Winter N, Daffé M
Revisiting the structure of the anti-neoplastic glucans of Mycobacterium bovis Bacille Calmette-Guérin. Structural analysis of the extracellular and boiling water extract-derived glucans of the vaccine substrains
Journal of Biological Chemistry 279(13) (2004)
12369-78
a-D-Glcp-(1-6)-+
|
-4)-a-D-Glcp-(1-4)-a-D-Glcp-(1-4)-a-D-Glcp-(1-4)-a-D-Glcp-(1-4)-a-D-Glcp-(1-4)-a-D-Glcp-(1- |
Show graphically |
Mycobacterium tuberculosis
(NCBI TaxID 1773,
species name lookup)
Taxonomic group: bacteria / Actinobacteria
(Phylum: Actinobacteria)
Associated disease: infection due to Mycobacterium tuberculosis [ICD11:
XN1N2 
]
The structure was elucidated in this paperNCBI PubMed ID: 14715664Publication DOI: 10.1074/jbc.M308908200Journal NLM ID: 2985121RPublisher: Baltimore, MD: American Society for Biochemistry and Molecular Biology
Correspondence: mamadou.daffe

ipbs.fr
Institutions: Departement Mecanismes Moleculaires des Infections Mycobacteriennes, Institut de Pharmacologie et Biologie Structurale, UMR 5089 du CNRS et de l'Universite Paul Sabatier, 205 route de Narbonne, 31077 Toulouse cedex 04, France
The attenuated strain of Mycobacterium bovis, Bacille Calmette-Guérin (BCG), used worldwide to prevent tuberculosis and leprosy is also clinically used as an immunotherapeutic agent against superficial bladder cancer. An anti-tumor polysaccharide has been isolated from the boiling-water extract of the Tice substrain of BCG and tentatively characterized as consisting primarily of repeating units of 6-linked-glucosyl residues. M. tuberculosis and other mycobacterial species produce a glycogen-like α-glucan, composed of repeating units of 4-linked-glucosyl residues substituted at some positions 6 by short oligoglucosyl units, that also exhibits an anti-tumor activity. Therefore, the impression prevails that mycobacteria synthesize different types of anti-neoplastic glucans or, alternatively, the BCG substrains are singular in producing a unique type of glucan that may confer to them their immunotherapeutic property. The present study addresses this question through the comparative analysis of α-glucans purified from the extracellular materials and boiling-water extracts of three vaccine substrains. The polysaccharides were purified and their structural features were established by mono-and two-dimensional NMR spectroscopy and matrix-assisted laser desorption/ionization time-of-flight mass spectrometry of the enzymatic and chemical degradation products of the purified compounds. The glucans isolated by the two methods from the three substrains of BCG were shown to exhibit identical structural features shared with the glycogen-like α-glucan of M. tuberculosis and other mycobacteria. Incidentally, we observed an occasional release of dextrans from Sephadex columns that may explain the reported occurrence of 6-substituted-α-glucans in mycobacteria.
structure, NMR spectroscopy, Mycobacterium, vaccine, glucan, tuberculosis
Structure type: polymer chemical repeating unit
Location inside paper: Fig. 1
Trivial name: repeating unit of the glycogen-like glucan
Contained glycoepitopes: IEDB_140629,IEDB_142488,IEDB_144998,IEDB_146664,IEDB_420417,IEDB_420418,IEDB_420419,IEDB_420421,IEDB_857742,IEDB_983931,SB_192
Methods: 13C NMR, 1H NMR, NMR-2D, GC-MS, sugar analysis, GC, RT-PCR, aminopyrene trisulfonic acid derivatization
Biological activity: anti-neoplastic activity
Biosynthesis and genetic data: genetic data
Comments, role: one of repeating unit types of the glycogen-like glucan purified from the culture filtrate and surface-exposed materials of M. tuberculosis
Related record ID(s): 9531, 9628
NCBI Taxonomy refs (TaxIDs): 1773Reference(s) to other database(s): GTC:G94234FR, GlycomeDB:
27604
Show glycosyltransferases
NMR conditions: in D2O
[as TSV]
13C NMR data:
Linkage Residue C1 C2 C3 C4 C5 C6
4,4,4,4,4 aDGlcp 100.1 72.0 73.8 78.0 72.0 61.3
4,4,4,4 aDGlcp 100.1 72.0 73.8 78.0 72.0 61.3
4,4,4,6 aDGlcp ? ? ? ? ? ?
4,4,4 aDGlcp 98.5 ? ? ? ? ?
4,4 aDGlcp 100.1 72.0 73.8 78.0 72.0 61.3
4 aDGlcp 100.1 72.0 73.8 78.0 72.0 61.3
aDGlcp 100.1 72.0 73.8 78.0 72.0 61.3
1H NMR data:
Linkage Residue H1 H2 H3 H4 H5 H6
4,4,4,4,4 aDGlcp 5.38 3.66 3.98 3.66 3.85 ?
4,4,4,4 aDGlcp 5.38 3.66 3.98 3.66 3.85 ?
4,4,4,6 aDGlcp ? ? ? ? ? ?
4,4,4 aDGlcp 4.99 3.64 4.03 3.66 3.88 ?
4,4 aDGlcp 5.38 3.66 3.98 3.66 3.85 ?
4 aDGlcp 5.38 3.66 3.98 3.66 3.85 ?
aDGlcp 5.38 3.66 3.98 3.66 3.85 ?
1H/13C HSQC data:
Linkage Residue C1/H1 C2/H2 C3/H3 C4/H4 C5/H5 C6/H6
4,4,4,4,4 aDGlcp 100.1/5.38 72.0/3.66 73.8/3.98 78.0/3.66 72.0/3.85 61.3/?
4,4,4,4 aDGlcp 100.1/5.38 72.0/3.66 73.8/3.98 78.0/3.66 72.0/3.85 61.3/?
4,4,4,6 aDGlcp ?/? ?/? ?/? ?/? ?/? ?/?
4,4,4 aDGlcp 98.5/4.99 ?/3.64 ?/4.03 ?/3.66 ?/3.88 ?/?
4,4 aDGlcp 100.1/5.38 72.0/3.66 73.8/3.98 78.0/3.66 72.0/3.85 61.3/?
4 aDGlcp 100.1/5.38 72.0/3.66 73.8/3.98 78.0/3.66 72.0/3.85 61.3/?
aDGlcp 100.1/5.38 72.0/3.66 73.8/3.98 78.0/3.66 72.0/3.85 61.3/?
1H NMR data:
Linkage | Residue | H1 | H2 | H3 | H4 | H5 | H6 |
4,4,4,4,4 | aDGlcp | 5.38 | 3.66 | 3.98 | 3.66 | 3.85 | ? |
4,4,4,4 | aDGlcp | 5.38 | 3.66 | 3.98 | 3.66 | 3.85 | ? |
4,4,4,6 | aDGlcp | ? | ? | ? | ? | ? | ? |
4,4,4 | aDGlcp | 4.99 | 3.64 | 4.03 | 3.66 | 3.88 | ? |
4,4 | aDGlcp | 5.38 | 3.66 | 3.98 | 3.66 | 3.85 | ? |
4 | aDGlcp | 5.38 | 3.66 | 3.98 | 3.66 | 3.85 | ? |
| aDGlcp | 5.38 | 3.66 | 3.98 | 3.66 | 3.85 | ? |
|
13C NMR data:
Linkage | Residue | C1 | C2 | C3 | C4 | C5 | C6 |
4,4,4,4,4 | aDGlcp | 100.1 | 72.0 | 73.8 | 78.0 | 72.0 | 61.3 |
4,4,4,4 | aDGlcp | 100.1 | 72.0 | 73.8 | 78.0 | 72.0 | 61.3 |
4,4,4,6 | aDGlcp | ? | ? | ? | ? | ? | ? |
4,4,4 | aDGlcp | 98.5 | ? | ? | ? | ? | ? |
4,4 | aDGlcp | 100.1 | 72.0 | 73.8 | 78.0 | 72.0 | 61.3 |
4 | aDGlcp | 100.1 | 72.0 | 73.8 | 78.0 | 72.0 | 61.3 |
| aDGlcp | 100.1 | 72.0 | 73.8 | 78.0 | 72.0 | 61.3 |
|
 The spectrum also has 11 signals at unknown positions (not plotted). |
There is only one chemically distinct structure:
Expand this record
Collapse this record
Dinadayala P, Lemassu A, Granovski P, Cérantola S, Winter N, Daffé M
Revisiting the structure of the anti-neoplastic glucans of Mycobacterium bovis Bacille Calmette-Guérin. Structural analysis of the extracellular and boiling water extract-derived glucans of the vaccine substrains
Journal of Biological Chemistry 279(13) (2004)
12369-78
a-D-Glcp-(1-6)-a-D-Glcp-(1-6)-+
|
-4)-a-D-Glcp-(1-4)-a-D-Glcp-(1-4)-a-D-Glcp-(1-4)-a-D-Glcp-(1-4)-a-D-Glcp-(1-4)-a-D-Glcp-(1- |
Show graphically |
Mycobacterium tuberculosis
(NCBI TaxID 1773,
species name lookup)
Taxonomic group: bacteria / Actinobacteria
(Phylum: Actinobacteria)
Associated disease: infection due to Mycobacterium tuberculosis [ICD11:
XN1N2 
]
The structure was elucidated in this paperNCBI PubMed ID: 14715664Publication DOI: 10.1074/jbc.M308908200Journal NLM ID: 2985121RPublisher: Baltimore, MD: American Society for Biochemistry and Molecular Biology
Correspondence: mamadou.daffe

ipbs.fr
Institutions: Departement Mecanismes Moleculaires des Infections Mycobacteriennes, Institut de Pharmacologie et Biologie Structurale, UMR 5089 du CNRS et de l'Universite Paul Sabatier, 205 route de Narbonne, 31077 Toulouse cedex 04, France
The attenuated strain of Mycobacterium bovis, Bacille Calmette-Guérin (BCG), used worldwide to prevent tuberculosis and leprosy is also clinically used as an immunotherapeutic agent against superficial bladder cancer. An anti-tumor polysaccharide has been isolated from the boiling-water extract of the Tice substrain of BCG and tentatively characterized as consisting primarily of repeating units of 6-linked-glucosyl residues. M. tuberculosis and other mycobacterial species produce a glycogen-like α-glucan, composed of repeating units of 4-linked-glucosyl residues substituted at some positions 6 by short oligoglucosyl units, that also exhibits an anti-tumor activity. Therefore, the impression prevails that mycobacteria synthesize different types of anti-neoplastic glucans or, alternatively, the BCG substrains are singular in producing a unique type of glucan that may confer to them their immunotherapeutic property. The present study addresses this question through the comparative analysis of α-glucans purified from the extracellular materials and boiling-water extracts of three vaccine substrains. The polysaccharides were purified and their structural features were established by mono-and two-dimensional NMR spectroscopy and matrix-assisted laser desorption/ionization time-of-flight mass spectrometry of the enzymatic and chemical degradation products of the purified compounds. The glucans isolated by the two methods from the three substrains of BCG were shown to exhibit identical structural features shared with the glycogen-like α-glucan of M. tuberculosis and other mycobacteria. Incidentally, we observed an occasional release of dextrans from Sephadex columns that may explain the reported occurrence of 6-substituted-α-glucans in mycobacteria.
structure, NMR spectroscopy, Mycobacterium, vaccine, glucan, tuberculosis
Structure type: polymer chemical repeating unit
Location inside paper: Fig. 1
Trivial name: repeating unit types of the glycogen-like glucan
Contained glycoepitopes: IEDB_140629,IEDB_142488,IEDB_144998,IEDB_146664,IEDB_158538,IEDB_420417,IEDB_420418,IEDB_420419,IEDB_420421,IEDB_857742,IEDB_983931,SB_192
Methods: 13C NMR, 1H NMR, NMR-2D, GC-MS, sugar analysis, GC, RT-PCR, aminopyrene trisulfonic acid derivatization
Biological activity: anti-neoplastic activity
Biosynthesis and genetic data: genetic data
Comments, role: one of repeating unit types of the glycogen-like glucan purified from the culture filtrate and surface-exposed materials of M. tuberculosis
Related record ID(s): 9531, 9627
NCBI Taxonomy refs (TaxIDs): 1773Reference(s) to other database(s): GTC:G72188WQ, GlycomeDB:
27605
Show glycosyltransferases
NMR conditions: in D2O
[as TSV]
13C NMR data:
Linkage Residue C1 C2 C3 C4 C5 C6
4,4,4,4,4 aDGlcp 100.1 72.0 73.8 78.0 72.0 61.3
4,4,4,4 aDGlcp 100.1 72.0 73.8 78.0 72.0 61.3
4,4,4,6,6 aDGlcp ? ? ? ? ? ?
4,4,4,6 aDGlcp ? ? ? ? ? ?
4,4,4 aDGlcp 98.5 ? ? ? ? ?
4,4 aDGlcp 100.1 72.0 73.8 78.0 72.0 61.3
4 aDGlcp 100.1 72.0 73.8 78.0 72.0 61.3
aDGlcp 100.1 72.0 73.8 78.0 72.0 61.3
1H NMR data:
Linkage Residue H1 H2 H3 H4 H5 H6
4,4,4,4,4 aDGlcp 5.38 3.66 3.98 3.66 3.85 ?
4,4,4,4 aDGlcp 5.38 3.66 3.98 3.66 3.85 ?
4,4,4,6,6 aDGlcp ? ? ? ? ? ?
4,4,4,6 aDGlcp ? ? ? ? ? ?
4,4,4 aDGlcp 4.99 3.64 4.03 3.66 3.88 ?
4,4 aDGlcp 5.38 3.66 3.98 3.66 3.85 ?
4 aDGlcp 5.38 3.66 3.98 3.66 3.85 ?
aDGlcp 5.38 3.66 3.98 3.66 3.85 ?
1H/13C HSQC data:
Linkage Residue C1/H1 C2/H2 C3/H3 C4/H4 C5/H5 C6/H6
4,4,4,4,4 aDGlcp 100.1/5.38 72.0/3.66 73.8/3.98 78.0/3.66 72.0/3.85 61.3/?
4,4,4,4 aDGlcp 100.1/5.38 72.0/3.66 73.8/3.98 78.0/3.66 72.0/3.85 61.3/?
4,4,4,6,6 aDGlcp ?/? ?/? ?/? ?/? ?/? ?/?
4,4,4,6 aDGlcp ?/? ?/? ?/? ?/? ?/? ?/?
4,4,4 aDGlcp 98.5/4.99 ?/3.64 ?/4.03 ?/3.66 ?/3.88 ?/?
4,4 aDGlcp 100.1/5.38 72.0/3.66 73.8/3.98 78.0/3.66 72.0/3.85 61.3/?
4 aDGlcp 100.1/5.38 72.0/3.66 73.8/3.98 78.0/3.66 72.0/3.85 61.3/?
aDGlcp 100.1/5.38 72.0/3.66 73.8/3.98 78.0/3.66 72.0/3.85 61.3/?
1H NMR data:
Linkage | Residue | H1 | H2 | H3 | H4 | H5 | H6 |
4,4,4,4,4 | aDGlcp | 5.38 | 3.66 | 3.98 | 3.66 | 3.85 | ? |
4,4,4,4 | aDGlcp | 5.38 | 3.66 | 3.98 | 3.66 | 3.85 | ? |
4,4,4,6,6 | aDGlcp | ? | ? | ? | ? | ? | ? |
4,4,4,6 | aDGlcp | ? | ? | ? | ? | ? | ? |
4,4,4 | aDGlcp | 4.99 | 3.64 | 4.03 | 3.66 | 3.88 | ? |
4,4 | aDGlcp | 5.38 | 3.66 | 3.98 | 3.66 | 3.85 | ? |
4 | aDGlcp | 5.38 | 3.66 | 3.98 | 3.66 | 3.85 | ? |
| aDGlcp | 5.38 | 3.66 | 3.98 | 3.66 | 3.85 | ? |
|
13C NMR data:
Linkage | Residue | C1 | C2 | C3 | C4 | C5 | C6 |
4,4,4,4,4 | aDGlcp | 100.1 | 72.0 | 73.8 | 78.0 | 72.0 | 61.3 |
4,4,4,4 | aDGlcp | 100.1 | 72.0 | 73.8 | 78.0 | 72.0 | 61.3 |
4,4,4,6,6 | aDGlcp | ? | ? | ? | ? | ? | ? |
4,4,4,6 | aDGlcp | ? | ? | ? | ? | ? | ? |
4,4,4 | aDGlcp | 98.5 | ? | ? | ? | ? | ? |
4,4 | aDGlcp | 100.1 | 72.0 | 73.8 | 78.0 | 72.0 | 61.3 |
4 | aDGlcp | 100.1 | 72.0 | 73.8 | 78.0 | 72.0 | 61.3 |
| aDGlcp | 100.1 | 72.0 | 73.8 | 78.0 | 72.0 | 61.3 |
|
 The spectrum also has 17 signals at unknown positions (not plotted). |
There is only one chemically distinct structure:
Expand this record
Collapse this record
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