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Taxonomic group: bacteria / Firmicutes (Phylum: Firmicutes)

NCBI PubMed ID: 30446142
Publication DOI: 10.1016/j.carbpol.2018.10.063
Journal NLM ID: 8307156
Publisher: Elsevier
Correspondence: B. Svensson <bis

bio.dtu.dk>
Institutions: Saint-Hyacinthe Research and Development Centre, Agriculture and Agri-Food Canada, 3600 Casavant Boulevard West, Saint-Hyacinthe, Quebec J2S 8E3, Canada, Enzyme and Protein Chemistry, Department of Biotechnology and Biomedicine, Technical University of Denmark, Soltofts Plads, Building 224, DK-2800 Kgs. Lyngby, Denmark, Centre de Recherches sur les Macromolécules Végétales, CNRS, University of Grenoble Alpes, BP53, F-38041 Grenoble Cedex, France

The EPS Database (EPS-DB) is a web-based, platform-independent database of bacterial exopolysaccharides (EPSs) providing access to detailed structural, taxonomic, growth conditions, functional properties, genetic, and bibliographic information for EPSs. It is freely available on the Internet as a website at http://www.epsdatabase.com. Several structural data representation schemes are used following the most commonly accepted formats. This guarantees full interoperability with other structural, experimental, and functional databases in the area of glycoscience. The scientific usage of EPS-DB throughout a user-friendly interface is presented with a subsection of the database exemplified by EPSs from lactic acid bacteria.

genetics, Exopolysaccharide structure, function, search, database, Sequence of residues

Structure type: polymer chemical repeating unit
Location inside paper: p.568, fig.3
Compound class: EPS
Contained glycoepitopes: IEDB_135813,IEDB_136044,IEDB_136095,IEDB_137340,IEDB_137472,IEDB_1391966,IEDB_141794,IEDB_141807,IEDB_142351,IEDB_142487,IEDB_142488,IEDB_144998,IEDB_146664,IEDB_149139,IEDB_149141,IEDB_151531,IEDB_190606,IEDB_983931,SB_145,SB_165,SB_166,SB_173,SB_187,SB_192,SB_195,SB_6,SB_7,SB_88

Methods: data sources and format, structure and usage of the EPS database

NCBI Taxonomy refs (TaxIDs): 59310
Reference(s) to other database(s): GTC:G35797OF, GlycomeDB:26578
Show glycosyltransferases

There is only one chemically distinct structure:

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SVG MW SMILES 3D mol Ionize