Taxonomic group: bacteria / Firmicutes
(Phylum: Firmicutes)
The structure was elucidated in this paperNCBI PubMed ID: 31246026Publication DOI: 10.1021/acs.jafc.9b03234Journal NLM ID: 0374755Publisher: American Chemical Society
Correspondence: xiaomin

jiangnan.edu.cn; jlu

jiangnan.edu.cn
Institutions: The Key Laboratory of Industrial Biotechnology, Ministry of Education, Jiangnan University, 1800 Lihu Road, Wuxi 214122, P. R. China, National Engineering Laboratory for Cereal Fermentation Technology, Jiangnan University, 1800 Lihu Road, Wuxi 214122 , P. R. China, Jiangsu Provincial Research Center for Bioactive Product Processing Technology, Jiangnan University, 1800 Lihu Road, Wuxi 214122, P. R. China, School of Biotechnology, Jiangnan University, 1800 Lihu Road, Wuxi 214122 , P. R. China
A special levan-type exopolysaccharide (EPS) from Bacillus amyloliquefaciens JN4 with antiadhesive activity against enterotoxigenic Escherichia coli (ETEC) was purified and identified. Chemical analysis indicated that EPS-JN4 with a low molecular weight of 8 kDa is composed of fructose and glucose with a molar ratio of 46.1:1. Structural analysis clarified that EPS-JN4 contains a main chain of β-(2,6)-linked Fruf residues and intensive branches of a single 2-linked Fruf at every six residues. Furthermore, the superior antiadhesive activity of EPS-JN4 against ETEC showed its potential usage as an antiadhesive agent for diarrhea prevention. EPS-JN4 is a specific type of levan family, for its small molecular size and intensive branches. The results expand the knowledge on structural types of levan and illustrate its potential as an antiadhesive agent for diarrhea prevention, which will be conducive to elucidate the relation between structure and function.
enterotoxigenic, exopolysaccharide, enterotoxigenic Escherichia coli, levan, antiadhesive, Bacillus amyloliquefaciens
Structure type: polymer chemical repeating unit ; 8000
Location inside paper: p.8033, fig.4
Trivial name: levan-type EPS
Compound class: EPS
Contained glycoepitopes: IEDB_923066
Methods: 13C NMR, 1H NMR, NMR-2D, methylation, IR, GC-MS, sugar analysis, HPAEC-PAD, hemagglutination, HPGFC
Comments, role: Proposed structure of the repeating units of EPS-JN4.
NCBI Taxonomy refs (TaxIDs): 1390
Show glycosyltransferases
NMR conditions: in D2O at 295 K
[as TSV]
13C NMR data:
Linkage Residue C1 C2 C3 C4 C5 C6
6 bDFruf 62.4 106.7 78.8 77.7 82.9 66.0
6,6,1 bDFruf 62.7 106.3 78.8 77.7 83.6 64.7
6,6 bDFruf 62.4 106.0 79.2 76.8 82.9 65.8
bDFruf
1H NMR data:
Linkage Residue H1 H2 H3 H4 H5 H6
6 bDFruf 3.62-3.74 - 4.16 4.07 3.89 3.49-3.87
6,6,1 bDFruf 3.64-3.74 - 4.14 4.07 3.84 3.84
6,6 bDFruf 3.65-3.71 - 4.20 4.07 3.93 3.52-3.83
bDFruf
1H/13C HSQC data:
Linkage Residue C1/H1 C2/H2 C3/H3 C4/H4 C5/H5 C6/H6
6 bDFruf 62.4/3.62-3.74 78.8/4.16 77.7/4.07 82.9/3.89 66.0/3.49-3.87
6,6,1 bDFruf 62.7/3.64-3.74 78.8/4.14 77.7/4.07 83.6/3.84 64.7/3.84
6,6 bDFruf 62.4/3.65-3.71 79.2/4.20 76.8/4.07 82.9/3.93 65.8/3.52-3.83
bDFruf
1H NMR data:
Linkage | Residue | H1 | H2 | H3 | H4 | H5 | H6 |
6 | bDFruf | 3.62 3.74 |
| 4.16 | 4.07 | 3.89 | 3.49 3.87 |
6,6,1 | bDFruf | 3.64 3.74 |
| 4.14 | 4.07 | 3.84 | 3.84 |
6,6 | bDFruf | 3.65 3.71 |
| 4.20 | 4.07 | 3.93 | 3.52 3.83 |
| bDFruf | |
|
13C NMR data:
Linkage | Residue | C1 | C2 | C3 | C4 | C5 | C6 |
6 | bDFruf | 62.4 | 106.7 | 78.8 | 77.7 | 82.9 | 66.0 |
6,6,1 | bDFruf | 62.7 | 106.3 | 78.8 | 77.7 | 83.6 | 64.7 |
6,6 | bDFruf | 62.4 | 106.0 | 79.2 | 76.8 | 82.9 | 65.8 |
| bDFruf | |
|
There is only one chemically distinct structure:
Taxonomic group: bacteria / Proteobacteria
(Phylum: Proteobacteria)
The structure was elucidated in this paperNCBI PubMed ID: 35927129Publication DOI: 10.1016/j.jbiosc.2022.06.015Journal NLM ID: 100888800Publisher: Osaka, Japan, Amsterdam, The Netherlands: Society for Bioscience and Bioengineering
Correspondence: W. Zhao <zhaow

jiangnan.edu.cn>
Institutions: State Key Laboratory of Food Science and Technology, Jiangnan University, Wuxi, Jiangsu 214122, PR China, School of Food Science and Technology, Jiangnan University, Wuxi, Jiangsu 214122, PR China
In this study, a bacterium with the ability to extracellularly produce a water-soluble polysaccharide (with high molecular mass of 743 kDa) was obtained from saline soils. This strain named as ZB01 was identified as Rhizobium punsense by 16S rRNA sequence analysis. The monomer composition and structure of extracellular polysaccharides were investigated by high-performance anion-exchange chromatography-pulsed amperometric detector, Fourier-transform infrared, methylation and nuclear magnetic resonance spectroscopy analysis. In addition, the morphological characterization of extracellular polysaccharides was performed by scanning electron microscopy analysis. As a result, the polysaccharide is found to be a novel water-soluble type of glucan most likely consisting of repeating two β-D-Glcp-(1→3) and one α-D-Glcp-(1→3). Furthermore, it showed pronounced antimicrobial effects against Escherichia coli and Bacillus subtilis, suggesting it has the potential to be used as a natural antibacterial agent in the future.
structure, exopolysaccharide, glucan, antimicrobial activity, Rhizobium pusense
Structure type: polymer chemical repeating unit ; 743580
Location inside paper: Fig. S1, table S2, EPS
Trivial name: water-soluble type of β-glucan
Compound class: EPS
Contained glycoepitopes: IEDB_142488,IEDB_144998,IEDB_146664,IEDB_153543,IEDB_153755,IEDB_983931,SB_192
Methods: 13C NMR, 1H NMR, NMR-2D, methylation, GC-MS, sugar analysis, DNA techniques, FTIR, ion-exchange chromatography, fermentation, SEM, antimicrobial assay, HPGFC
Comments, role: published NMR chemical shift of C1 #3_aDGlcp (92.02) seemed erroneous
NCBI Taxonomy refs (TaxIDs): 648995
Show glycosyltransferases
NMR conditions: in D2O at 333 K
[as TSV]
13C NMR data:
Linkage Residue C1 C2 C3 C4 C5 C6
3,3 bDGlcp 103.72 74.42 84.10 69.32 78.42 63.92
3 aDGlcp ? 72.97 81.28 70.87 74.37 60.99
bDGlcp 102.53 75.47 84.06 69.50 78.46 62.36
1H NMR data:
Linkage Residue H1 H2 H3 H4 H5 H6
3,3 bDGlcp 4.50 3.52 3.62 3.34 3.53 3.56
3 aDGlcp 5.26 3.12 3.68 3.50 3.41 3.60
bDGlcp 4.40 3.27 3.52 3.21 3.46 3.66
1H/13C HSQC data:
Linkage Residue C1/H1 C2/H2 C3/H3 C4/H4 C5/H5 C6/H6
3,3 bDGlcp 103.72/4.50 74.42/3.52 84.10/3.62 69.32/3.34 78.42/3.53 63.92/3.56
3 aDGlcp ?/5.26 72.97/3.12 81.28/3.68 70.87/3.50 74.37/3.41 60.99/3.60
bDGlcp 102.53/4.40 75.47/3.27 84.06/3.52 69.50/3.21 78.46/3.46 62.36/3.66
1H NMR data:
Linkage | Residue | H1 | H2 | H3 | H4 | H5 | H6 |
3,3 | bDGlcp | 4.50 | 3.52 | 3.62 | 3.34 | 3.53 | 3.56 |
3 | aDGlcp | 5.26 | 3.12 | 3.68 | 3.50 | 3.41 | 3.60 |
| bDGlcp | 4.40 | 3.27 | 3.52 | 3.21 | 3.46 | 3.66 |
|
13C NMR data:
Linkage | Residue | C1 | C2 | C3 | C4 | C5 | C6 |
3,3 | bDGlcp | 103.72 | 74.42 | 84.10 | 69.32 | 78.42 | 63.92 |
3 | aDGlcp | ? | 72.97 | 81.28 | 70.87 | 74.37 | 60.99 |
| bDGlcp | 102.53 | 75.47 | 84.06 | 69.50 | 78.46 | 62.36 |
|
 The spectrum also has 1 signal at unknown position (not plotted). |
There is only one chemically distinct structure: