CSDB glycosyltransferase search

6 glycosyltransferase activities have been found.
Please note that CSDB GT database covers only a few species: Arabidopsis thaliana, Escherichia coli, Saccharomyces cerevisiae, Acinetobacter baumannii.

Enzyme / Gene	Activity	Object	References
Enzyme name: KfiA UniProt ID: Q47332* CAZy family: GT45	Synthesized dimer: aDGlcpN(1-4)bDGlcpA Donor (ID 33759): Ac(1-2)aDGlcpN(1-P-P-5)xXnucU Acceptor (ID 34555): -4)bDGlcpA(1-4)[Ac(1-2)]aDGlcpN(1- Status: suggested Confirmation methods: based on the structure found in vivo ID: 2296 Notes: KfiA, together with KfiC, alternatively incorporates GlcNAc and GlcA residues to the nonreducing ends of the oligo- or polysaccharides -4)bDGlcpA(1-4)[Ac(1-2)]aDGlcpN(1-.	Organism (ID 503): Escherichia coli K5 Full structure (ID 886): CSDB ID(s): 126836, 26900, 26387, 26386, 26283, 26222, 26123, 24810, 24809, 28740, 29189, 29362, 122543, 118190, 117746, 101033, 65169, 32170, 30682, 29818, 23633, 20270, 6676, 6569, 6270, 5890, 4902, 2404, 1095, 762, 395, 6889, 7122, 11247, 10573, 10417, 9233, 8931, 8902, 8005, 7491, 7490	Chen et al. 2006 DOI: 10.1021/bi060844g
Synthesized dimer: aDGlcpN(1-4)bDGlcpA Donor (ID 33759): Ac(1-2)aDGlcpN(1-P-P-5)xXnucU Acceptor (ID 34556): bDGlcpA(1-4)[Ac(1-2)]aDGlcpN(1-4)bDGlcpA(1-4)[Ac(1-2)]aDGlcpN Status: evidence in vitro Confirmation methods: in vitro (purified protein), mutation, in vitro (crude extract) ID: 2297 Notes: K5-derived oligosaccharides were used as substrate. KfiA is capable of transferring the GlcNAc residue to an acceptor as small as a disaccharide. A sample acceptor structure is shown.	Organism (ID 503): Escherichia coli K5 Full structure (ID 34557):	Sigura et al. 2010 DOI: 10.1074/jbc.M109.023002 Hodson et al. 2000 DOI: 10.1074/jbc.M004426200 Chen et al. 2006 DOI: 10.1021/bi060844g
Synthesized dimer: aDGlcpN(1-4)bDGlcpA Donor (ID 33759): Ac(1-2)aDGlcpN(1-P-P-5)xXnucU Acceptor (ID 34558): bDGlcpA(1-1)Subst // Subst = SMILES O=C(CCC(NCC{1}CO)=O)NC1=CC=CC=C1C(OC)=O Status: evidence in vitro Confirmation methods: in vitro(purified protein) ID: 2298 Notes: KfiA can use uridine 5'-diphosphate-N-acetylglucosamine (UDP-GlcNAc) and some of its C2'- and C6'-derivatives as donor substrates.	Organism (ID 503): Escherichia coli K5 Full structure (ID 34559):	Li et al. 2014 DOI: 10.1007/s00253-013-4947-1
Enzyme name: WcnM UniProt ID: E2DNN4 CAZy family: GT4 Gene name: wcnM Gene cluster ID: AB972423	Synthesized dimer: aDGlcpN(1-4)bDGlcpA Status: predicted in silico Confirmation methods: in silico ID: 2780	Organism (ID 8198): Escherichia coli O137 Full structure (ID 12263): CSDB ID(s): 1879 Molecule role: O-antigen	Iguchi et al. 2015 DOI: 10.1093/dnares/dsu043
Enzyme name: PmHS2 UniProt ID: Q5SGE1* CAZy family: GT2; GT45	Synthesized dimer: aDGlcpN(1-4)bDGlcpA Donor (ID 33759): Ac(1-2)aDGlcpN(1-P-P-5)xXnucU Acceptor (ID 34558): bDGlcpA(1-1)Subst // Subst = SMILES O=C(CCC(NCC{1}CO)=O)NC1=CC=CC=C1C(OC)=O Status: evidence in vitro Confirmation methods: in vitro(purified protein) ID: 3009 Notes: PmHS2 can use uridine 5'-diphosphate-N-acetylglucosamine (UDP-GlcNAc) and some of its C2'- and C6'-derivatives as donor substrates.	Organism (ID 17334): Pasteurella multocida K5 Full structure (ID 34559):	Li et al. 2014 DOI: 10.1007/s00253-013-4947-1
Enzyme name: Gtr45 Enzyme GenBank ID: AUG44318.1 CAZy family: GT4 Gene name: gtr45 Gene cluster ID: MG231275.1	Synthesized dimer: aDGlcpN(1-4)bDGlcpA Donor (ID 33944): Ac(1-2)?DGlcpN(1-P-P-5)xXnucU Acceptor (ID 35096): bDGlcpA(1-3)[<<50%lS3HOBut(1-4)\|50%Ac(1-4)>>,Ac(1-2)]bDQuipN4N(1-P-P-1)Subst // Subst = undecaprenol Status: predicted in silico Confirmation methods: Sequencing (gene, protein) ID: 3684 Notes: retaining GT, gene cluster name: KL21	Organism (ID 7728): Acinetobacter baumannii G21 Exact full structure is unknownCSDB ID(s): 6744, 12625 Molecule role: CPS	Kasimova et al. 2018a DOI: 10.1093/glycob/cwy074

#GTR ID	Enzyme name	Enzyme group	Enzyme Genbank ID	Derived ID mark	Enzyme Uniprot ID	Derived ID mark	CAZY family	Gene name	Gene Genbank ID	Derived ID mark	Gene cluster	Full structure CSDB structure ID	Side product CSDB structure ID	Full structure	Full structure is fragment (0|1)	Synthesized bond	Synthesized bond location (from root ~ subst position)	Donor structure ID	Substrate structure	Confirmation status	Methods used	Notes	Molecule role	Molecule is a model of role (0|1)	Molecule is a precursor of role (0|1)	Main CSDB record ID	Additional CSDB record IDs	CSDB organism IDs	Organism names	Organs and tissues	References (;-separated)
2296	KfiA				Q47332	*	GT45					886		-4)bDGlcpA(1-4)[Ac(1-2)]aDGlcpN(1-	0	aDGlcpN(1-4)bDGlcpA	1~4	Ac(1-2)aDGlcpN(1-P-P-5)xXnucU	-4)bDGlcpA(1-4)[Ac(1-2)]aDGlcpN(1-	suggested	based on the structure found in vivo	KfiA, together with KfiC, alternatively incorporates GlcNAc and GlcA residues to the nonreducing ends of the oligo- or polysaccharides -4)bDGlcpA(1-4)[Ac(1-2)]aDGlcpN(1-.		1	0		126836,26900,26387,26386,26283,26222,26123,24810,24809,28740,29189,29362,122543,118190,117746,101033,65169,32170,30682,29818,23633,20270,6676,6569,6270,5890,4902,2404,1095,762,395,6889,7122,11247,10573,10417,9233,8931,8902,8005,7491,7490	503	Escherichia coli K5		Chen et al. 2006 (doi: 10.1021/bi060844g)	
2297	KfiA				Q47332	*	GT45					34557		Ac(1-2)aDGlcpN(1-4)bDGlcpA(1-4)[Ac(1-2)]aDGlcpN(1-4)bDGlcpA(1-4)[Ac(1-2)]aDGlcpN	0	aDGlcpN(1-4)bDGlcpA	4~4	Ac(1-2)aDGlcpN(1-P-P-5)xXnucU	bDGlcpA(1-4)[Ac(1-2)]aDGlcpN(1-4)bDGlcpA(1-4)[Ac(1-2)]aDGlcpN	in vitro	in vitro (purified protein), mutation, in vitro (crude extract)	K5-derived oligosaccharides were used as substrate. KfiA is capable of transferring the GlcNAc residue to an acceptor as small as a disaccharide. A sample acceptor structure is shown.		1	0			503	Escherichia coli K5		Sigura et al. 2010 (doi: 10.1074/jbc.M109.023002); Hodson et al. 2000 (doi: 10.1074/jbc.M004426200); Chen et al. 2006 (doi: 10.1021/bi060844g)	
2298	KfiA				Q47332	*	GT45					34559		Ac(1-2)aDGlcpN(1-4)bDGlcpA(1-1)Subst // Subst = SMILES O=C(CCC(NCC{1}CO)=O)NC1=CC=CC=C1C(OC)=O	0	aDGlcpN(1-4)bDGlcpA	2~4	Ac(1-2)aDGlcpN(1-P-P-5)xXnucU	bDGlcpA(1-1)Subst // Subst = SMILES O=C(CCC(NCC{1}CO)=O)NC1=CC=CC=C1C(OC)=O	in vitro	in vitro(purified protein)	KfiA can use uridine 5'-diphosphate-N-acetylglucosamine (UDP-GlcNAc) and some of its C2'- and C6'-derivatives as donor substrates.		1	0			503	Escherichia coli K5		Li et al. 2014 (doi: 10.1007/s00253-013-4947-1)	
2780	WcnM				E2DNN4		GT4	wcnM			AB972423	12263		-6)[bDGlcp(1-4),Ac(1-2)]aDGlcpN(1-4)bDGlcpA(1-4)[Ac(1-2)]bDGlcpN(1-	0	aDGlcpN(1-4)bDGlcpA	3~4			in silico	in silico		O-antigen	0	0		1879	8198	Escherichia coli O137		Iguchi et al. 2015 (doi: 10.1093/dnares/dsu043)	
3009	PmHS2				Q5SGE1	*	GT2;GT45					34559		Ac(1-2)aDGlcpN(1-4)bDGlcpA(1-1)Subst // Subst = SMILES O=C(CCC(NCC{1}CO)=O)NC1=CC=CC=C1C(OC)=O	0	aDGlcpN(1-4)bDGlcpA	2~4	Ac(1-2)aDGlcpN(1-P-P-5)xXnucU	bDGlcpA(1-1)Subst // Subst = SMILES O=C(CCC(NCC{1}CO)=O)NC1=CC=CC=C1C(OC)=O	in vitro	in vitro(purified protein)	PmHS2 can use uridine 5'-diphosphate-N-acetylglucosamine (UDP-GlcNAc) and some of its C2'- and C6'-derivatives as donor substrates.		0	0			17334	Pasteurella multocida K5		Li et al. 2014 (doi: 10.1007/s00253-013-4947-1)	
3684	Gtr45		AUG44318.1				GT4	gtr45			MG231275.1 	35094		-2)[xRPyr(2-4:2-6)]bDGalp(1-3)[Ac(1-2)]aDGlcpN(1-4)bDGlcpA(1-3)[<<50%lS3HOBut(1-4)|50%Ac(1-4)>>,Ac(1-2)]bDQuipN4N(1-	1	aDGlcpN(1-4)bDGlcpA	?~4	Ac(1-2)?DGlcpN(1-P-P-5)xXnucU	bDGlcpA(1-3)[<<50%lS3HOBut(1-4)|50%Ac(1-4)>>,Ac(1-2)]bDQuipN4N(1-P-P-1)Subst // Subst = undecaprenol	in silico	Sequencing (gene, protein)	retaining GT, gene cluster name: KL21	CPS	0	0		6744,12625	7728	Acinetobacter baumannii G21		Kasimova et al. 2018a (doi: 10.1093/glycob/cwy074)